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Book Review- Machine Learning for Hackers

This is review of the fashionably named book Machine Learning for Hackers by Drew Conway and John Myles White (O’Reilly ). The book is about hacking code in R.

 

The preface introduces the reader to the authors conception of what machine learning and hacking is all about. If the name of the book was machine learning for business analytsts or data miners, I am sure the content would have been unchanged though the popularity (and ambiguity) of the word hacker can often substitute for its usefulness. Indeed the many wise and learned Professors of statistics departments through out the civilized world would be mildly surprised and bemused by their day to day activities as hacking or teaching hackers. The book follows a case study and example based approach and uses the GGPLOT2 package within R programming almost to the point of ignoring any other native graphics system based in R. It can be quite useful for the aspiring reader who wishes to understand and join the booming market for skilled talent in statistical computing.

Chapter 1 has a very useful set of functions for data cleansing and formatting. It walks you through the basics of formatting based on dates and conditions, missing value and outlier treatment and using ggplot package in R for graphical analysis. The case study used is an Infochimps dataset with 60,000 recordings of UFO sightings. The case study is lucid, and done at a extremely helpful pace illustrating the powerful and flexible nature of R functions that can be used for data cleansing.The chapter mentions text editors and IDEs but fails to list them in a tabular format, while listing several other tables like Packages used in the book. It also jumps straight from installation instructions to functions in R without getting into the various kinds of data types within R or specifying where these can be referenced from. It thus assumes a higher level of basic programming understanding for the reader than the average R book.

Chapter 2 discusses data exploration, and has a very clear set of diagrams that explain the various data summary operations that are performed routinely. This is an innovative approach and will help students or newcomers to the field of data analysis. It introduces the reader to type determination functions, as well different kinds of encoding. The introduction to creating functions is quite elegant and simple , and numerical summary methods are explained adequately. While the chapter explains data exploration with the help of various histogram options in ggplot2 , it fails to create a more generic framework for data exploration or rules to assist the reader in visual data exploration in non standard data situations. While the examples are very helpful for a reader , there needs to be slightly more depth to step out of the example and into a framework for visual data exploration (or references for the same). A couple of case studies however elaborately explained cannot do justice to the vast field of data exploration and especially visual data exploration.

Chapter 3 discussed binary classification for the specific purpose for spam filtering using a dataset from SpamAssassin. It introduces the reader to the naïve Bayes classifier and the principles of text mining suing the tm package in R. Some of the example codes could have been better commented for easier readability in the book. Overall it is quite a easy tutorial for creating a naïve Bayes classifier even for beginners.

Chapter 4 discusses the issues in importance ranking and creating recommendation systems specifically in the case of ordering email messages into important and not important. It introduces the useful grepl, gsub, strsplit, strptime ,difftime and strtrim functions for parsing data. The chapter further introduces the reader to the concept of log (and affine) transformations in a lucid and clear way that can help even beginners learn this powerful transformation concept. Again the coding within this chapter is sparsely commented which can cause difficulties to people not used to learn reams of code. ( it may have been part of the code attached with the book, but I am reading an electronic book and I did not find an easy way to go back and forth between the code and the book). The readability of the chapters would be further enhanced by the use of flow charts explaining the path and process followed than overtly verbose textual descriptions running into multiple pages. The chapters are quite clearly written, but a helpful visual summary can help in both revising the concepts and elucidate the approach taken further.A suggestion for the authors could be to compile the list of useful functions they introduce in this book as a sort of reference card (or Ref Card) for R Hackers or atleast have a chapter wise summary of functions, datasets and packages used.

Chapter 5 discusses linear regression , and it is a surprising and not very good explanation of regression theory in the introduction to regression. However the chapter makes up in practical example what it oversimplifies in theory. The chapter on regression is not the finest chapter written in this otherwise excellent book. Part of this is because of relative lack of organization- correlation is explained after linear regression is explained. Once again the lack of a function summary and a process flow diagram hinders readability and a separate section on regression metrics that help make a regression result good or not so good could be a welcome addition. Functions introduced include lm.

Chapter 6 showcases Generalized Additive Model (GAM) and Polynomial Regression, including an introduction to singularity and of over-fitting. Functions included in this chapter are transform, and poly while the package glmnet is also used here. The chapter also introduces the reader formally to the concept of cross validation (though examples of cross validation had been introduced in earlier chapters) and regularization. Logistic regression is also introduced at the end in this chapter.

Chapter 7 is about optimization. It describes error metric in a very easy to understand way. It creates a grid by using nested loops for various values of intercept and slope of a regression equation and computing the sum of square of errors. It then describes the optim function in detail including how it works and it’s various parameters. It introduces the curve function. The chapter then describes ridge regression including definition and hyperparameter lamda. The use of optim function to optimize the error in regression is useful learning for the aspiring hacker. Lastly it describes a case study of breaking codes using the simplistic Caesar cipher, a lexical database and the Metropolis method. Functions introduced in this chapter include .Machine$double.eps .

Chapter 8 deals with Principal Component Analysis and unsupervised learning. It uses the ymd function from lubridate package to convert string to date objects, and the cast function from reshape package to further manipulate the structure of data. Using the princomp functions enables PCA in R.The case study creates a stock market index and compares the results with the Dow Jones index.

Chapter 9 deals with Multidimensional Scaling as well as clustering US senators on the basis of similarity in voting records on legislation .It showcases matrix multiplication using %*% and also the dist function to compute distance matrix.

Chapter 10 has the subject of K Nearest Neighbors for recommendation systems. Packages used include class ,reshape and and functions used include cor, function and log. It also demonstrates creating a custom kNN function for calculating Euclidean distance between center of centroids and data. The case study used is the R package recommendation contest on Kaggle. Overall a simplistic introduction to creating a recommendation system using K nearest neighbors, without getting into any of the prepackaged packages within R that deal with association analysis , clustering or recommendation systems.

Chapter 11 introduces the reader to social network analysis (and elements of graph theory) using the example of Erdos Number as an interesting example of social networks of mathematicians. The example of Social Graph API by Google for hacking are quite new and intriguing (though a bit obsolete by changes, and should be rectified in either the errata or next edition) . However there exists packages within R that should be atleast referenced or used within this chapter (like TwitteR package that use the Twitter API and ROauth package for other social networks). Packages used within this chapter include Rcurl, RJSONIO, and igraph packages of R and functions used include rbind and ifelse. It also introduces the reader to the advanced software Gephi. The last example is to build a recommendation engine for whom to follow in Twitter using R.

Chapter 12 is about model comparison and introduces the concept of Support Vector Machines. It uses the package e1071 and shows the svm function. It also introduces the concept of tuning hyper parameters within default algorithms . A small problem in understanding the concepts is the misalignment of diagram pages with the relevant code. It lastly concludes with using mean square error as a method for comparing models built with different algorithms.

 

Overall the book is a welcome addition in the library of books based on R programming language, and the refreshing nature of the flow of material and the practicality of it’s case studies make this a recommended addition to both academic and corporate business analysts trying to derive insights by hacking lots of heterogeneous data.

Have a look for yourself at-
http://shop.oreilly.com/product/0636920018483.do

Analytics 2011 Conference

From http://www.sas.com/events/analytics/us/

The Analytics 2011 Conference Series combines the power of SAS’s M2010 Data Mining Conference and F2010 Business Forecasting Conference into one conference covering the latest trends and techniques in the field of analytics. Analytics 2011 Conference Series brings the brightest minds in the field of analytics together with hundreds of analytics practitioners. Join us as these leading conferences change names and locations. At Analytics 2011, you’ll learn through a series of case studies, technical presentations and hands-on training. If you are in the field of analytics, this is one conference you can’t afford to miss.

Conference Details

October 24-25, 2011
Grande Lakes Resort
Orlando, FL

Analytics 2011 topic areas include:

  • Data Mining
  • Forecasting
  • Text Analytics
  • Fraud Detection
  • Data Visualization (more…)

Calling #Rstats lovers and bloggers – to work together on “The R Programming wikibook”

so you think u like R, huh. Well it is time to pay it forward.

Message from a dear R blogger, Tal G from Tel Aviv (creator of R-bloggers.com and SAS-X.com)

———————————————————————————————————-
Calling R lovers and bloggers – to work together on “The R Programming wikibook”
Posted: 20 Jun 2011 07:05 AM PDT

This post is a call for both R community members and R-bloggers, to come and help make The R Programming wikibook be amazing:

Dear R community member – please consider giving a visit to The R Programming wikibook. If you wish to contribute your knowledge and editing skills to the project, then you could learn how to write in wiki-markup here, and how to edit a wikibook here (you can even use R syntax highlighting in the wikibook). You could take information into the site from the (soon to be) growing list of available R resources for harvesting.

Dear R blogger, you can help The R Programming wikibook by doing the following:

Write to your readers about the project and invite them to join.
Add your blog’s R content as an available resource for other editors to use for the wikibook. Here is how to do that:
First, make a clear indication on your blog that your content is licensed under cc-by-sa copyrights (*see what it means at the end of the post). You can do this by adding it to the footer of your blog, or by writing a post that clearly states that this is the case (what a great opportunity to write to your readers about the project…).
Next, go and add a link, to where all of your R content is located on your site, to the resource page (also with a link to the license post, if you wrote one). For example, since I write about other things besides R, I would give a link to my R category page, and will also give a link to this post. If you do not know how to add it to the wiki, just e-mail me about it (tal.galili@gmail.com).
If you are an R blogger, besides living up to the spirit of the R community, you will benefit from joining this project in that every time someone will use your content on the wikibook, they will add your post as a resource. In the long run, this is likely to help visitors of the site get to know about you and strengthen your site’s SEO ranking. Which reminds me, if you write about this, I always appreciate a link back to my blog

* Having a cc-by-sa copyrights means that you will agree that anyone may copy, distribute, display, and make derivative works based on your content, only if they give the author (you) the credits in the manner specified by you. And also that the user may distribute derivative works only under a license identical to the license that governs the original work.

———-

Three more points:

1) This post is a result of being contacted by Paul (a.k.a: PAC2), asking if I could help promote “The R Programming wikibook” among R-bloggers and their readers. Paul has made many contributions to the book so far. So thank you Paul for both reaching out and helping all of us with your work on this free open source project.

2) I should also mention that the R wiki exists and is open for contribution. And naturally, every thing that will help the R wikibook will help the R wiki as well.

3) Copyright notice: I hereby release all of the writing material content that is categoriesed in the R category page, under the cc-by-sa copyrights (date: 20.06.2011). Now it’s your turn!

———-

List of R bloggers who have joined: (This list will get updated as this “group writing” project will progress)

R-statistics blog (that’s Tal…)
Decisionstats.com (That’s me)
……………………………………………………………………………….
3) Copyright notice: I hereby release all of the writing material content of this website, under the cc-by-sa copyrights (date: 21.06.2011). Now it’s your turn!

http://decisionstats.com/privacy-3/

Content Licensing-
This website has all content licensed under

http://creativecommons.org/licenses/by-sa/3.0/

You are free:
to Share — to copy, distribute and transmit the work
to Remix — to adapt the work

Youtube is coming Home

A continuing series on better design interfaces for my favorite music channel – You Tube

Some things I like.

The shrink- expand button.

The wasted space for advertisement – to the left of the video that is hugely static in terms of changes. It should be rotated more often.

The non existing average time of play- does everyone watch the whole video . or is the whole video watched 56 million times.

the inability to scroll and zoom into the video analytics.

the completely outdated comments button- which can be better used to create a SOCIAL community. but all it shows is top ranked comment, and click before dropping down. I liked the NYT approach to segmented comments including Editors Picks, Most Recommended, Highlights.

The video response feature that can be easily gamed to ensure video views /phishes.

The comments page numbers at the bottom instead of being at the top for the casual scanner of comments.

              Next

Facebook is the first button rather than second button in the minimum shared view list. Is that true? Can these buttons be self learning to my preferred social network instead of a default. (hint- use Google prediction API)

There is no provision to replay a video, unless you put into a playlist- which fortunately has been quite changed, even though the urls for playlists should have a separate url shortener than you.tube

A much better recommended playlist of related videos- they should be customized to the eclectic taste of the signed in user than the actual content. Maybe Try something like iTunes Genius feature.

No provision for a paid , premium channel even for countries that are blocked en masse from watching certain videos, hence depend on illegal video responses.

Chapman/Hall announces new series on R

Rice University, Houston, Texas, USA - Cohen H...

Image via Wikipedia

R Authors get more choice and variety now-
http://www.mail-archive.com/r-help@r-project.org/msg122965.html
We are pleased to announce the launch of a new series of books on R. 

Chapman & Hall/CRC: The R Series

Aims and Scope
This book series reflects the recent rapid growth in the development and 
application of R, the programming language and software environment for 
statistical computing and graphics. R is now widely used in academic research, 
education, and industry. It is constantly growing, with new versions of the 
core software released regularly and more than 2,600 packages available. It is 
difficult for the documentation to keep pace with the expansion of the 
software, and this vital book series provides a forum for the publication of 
books covering many aspects of the development and application of R.

The scope of the series is wide, covering three main threads:
• Applications of R to specific disciplines such as biology, epidemiology, 
genetics, engineering, finance, and the social sciences.
• Using R for the study of topics of statistical methodology, such as linear 
and mixed modeling, time series, Bayesian methods, and missing data.
• The development of R, including programming, building packages, and graphics.

The books will appeal to programmers and developers of R software, as well as 
applied statisticians and data analysts in many fields. The books will feature 
detailed worked examples and R code fully integrated into the text, ensuring 
their usefulness to researchers, practitioners and students.

Series Editors
John M. Chambers (Department of Statistics, Stanford University, USA; 
j...@stat.stanford.edu)
Torsten Hothorn (Institut für Statistik, Ludwig-Maximilians-Universität, 
München, Germany; torsten.hoth...@stat.uni-muenchen.de)
Duncan Temple Lang (Department of Statistics, University of California, Davis, 
USA; dun...@wald.ucdavis.edu)
Hadley Wickham (Department of Statistics, Rice University, Houston, Texas, USA; 
had...@rice.edu)

Call for Proposals
We are interested in books covering all aspects of the development and 
application of R software. If you have an idea for a book, please contact one 
of the series editors above or one of the Chapman & Hall/CRC statistics 
acquisitions editors below. Please provide brief details of topic, audience, 
aims and scope, and include an outline if possible.

We look forward to hearing from you.

Best regards,Rob Calver (rob.cal...@informa.com)
David Grubbs (david.gru...@taylorandfrancis.com)
John Kimmel (john.kim...@taylorandfrancis.com)

 

The Writer

Sorry, the words went, we cant offer you a contract
The cheque is in the mail, said another
I will send the contract shortly, was a thirds refrain
Not now, maybe next year, decade or century

Writers, unite
Nothing to lose,
but your editors and creditors

So once again,
going back to the broken worn laptop,
hammering away keys, to ham away the stoic egoistic grief

You are in the wrong country, color, class,
Just when you thought you got the hang of the game,
The game flipped, from rugby to basketball,
but not quite cricket.

You have been hanging out with the rich kids again,
with the richness of your thoughts to compensate,
for the inadequacy of your pocket.

Time to come back,
Dear writer,
It is time to write.

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